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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015865244.1_cds_XP_016432278.1_28536
CDS Infomation

[gene=LOC107758944] [db_xref=GeneID:107758944] [protein=transmembrane E3 ubiquitin-protein ligase 1-like isoform X2] [protein_id=XP_016432278.1] [location=complement(join(322084..322185,322288..322404,322636..322964,323900..324067,324384..324477,324588..324647,324729..324886,324993..325070,325151..325217,325789..325849,326414..326523,327486..327613,328818..328890,331555..331680))] [gbkey=CDS]
Sequence

ATGGGTGCCACAAAAAATTTGATCTTTTTAAGAATTCTGTTCTATTTATGGCTCTTCTTT
GGAGGGTTTTGCTCAGTAAAGGGACTCAGGCCTCTTAGAGAAAGGTCTCATTCGTGGAGT
GATGAGTGGCTATTTGCAAAGAAGAATGACAATGAGTTGGGGCCATTTTCTGCTTGGAAT
ATAACAGGAACATACAGAGGATCTTGGAGGTTCCTACATTCAAAGAATAGCTCTTCTCGA
TTTCCTGATTTTCAGAAGTCCAATGGAAACTCTGTCCTGGAATTGATTAGTGCCCCAACA
AAAATAACTGGTGTACATTATGTTCAGGGTGTCATAATTTTCCATGATGTTTTTGACAAT
GAACATGGGGGTGCTCAAATTAGAGTAGAAGGTGTATATGTATGGCCATTCAGACAACTT
CGGATGGTAGCTTACAGTGGCAAAGGGGGTGAGCTTGGGCAGGAAGACGATTATCTGTTA
TCAAATCCATATCATTTGCTTGGACTTTTCTCATCTCAGGTCTTCCAGGAGTCTCCACGA
GATAAGATTTGGAAGAGGAAACATTCACCTATTTATGAAATGGAGAAACATTGTAATGTT
GAAATTGCAGCACAAGTTTCTCGTGTGTCATCTTCCACTACTGATGTAGATCATGATCAT
TATCATCTAGAAGGATTGATGGAAAGCCCTTCAGTGGATGACGATGGAGACTGTTTCTCA
CCCATGCTATTAAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCAGTTAAC
TATACGTTGATGGTCACCTTTGTCTCTTTTCTTCAAGTGCTCCTCCTCATTCGGCAAATG
GAATATAGCAACACTCAATCAGGAGCTTCCAAAGTTTCAATTCTGATGATCGGACAACAG
GGAATAATTGATTCTTATCTTTGTCTTTTACATCTGACTGCAGGCATACTTGTTGAATCC
CTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTTGTGTTCTCAATATTTGAG
ATGAGATATCTTCTCGCTATATGGAAGGCAAATAGACCTATGAGTAGTGGAGAGGGCTGG
GAAGCAATGAGGCGCGAGCTATCAATTCTGTACAGCCGTTTCTATGGGATCCTTTTAGGT
GGCATTTTGGTCATGTACGAGTTCCATAAGTTTCTGCGGCCTCTTCTTCTCCTTTTACAC
TCTTTTTGGATACCTCAAGTTGTAACTAATGTTATTCGTGACTTGAGAAAACCATTGCAT
CCTCATTACATCTTGGGAATGACTATAACTCGGTTAGCAATCCCACTATATGTCTTTGGT
TGTCCTCACAATTTTATGCGGATAGAGCCCGACAAAAATTGGTGCATCTGCTTGGGAATT
TTCATGGCATTCCAAGCATCAATTCTTCTTTTGCAGCACTATCTTGGATCTCGGTGGTTC
ATTCCTCGTCAGATTTTACCGGAGAAGTATAGCTATTATAGAAGGTTTAACCAGGATGCA
GTTCGTGTCTCTGACTGTGTCATTTGCATGACTGCTATTGATCTTACTCAACGTGCAAAT
CATTGGATGGTGACGCCTTGTGATCATTTCTTTCATTCCGGTTGTTTACAAAGATGGATG
GACATAAAGATGGAGTGCCCAACATGCCGACGTCCTCTTCCTCCCGCCTGA

Peptide Sequence

PEP ID

XP_016432278.1
PEP Infomation

PREDICTED: transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Nicotiana tabacum]
Sequence

MGATKNLIFLRILFYLWLFFGGFCSVKGLRPLRERSHSWSDEWLFAKKNDNELGPFSAWN
ITGTYRGSWRFLHSKNSSSRFPDFQKSNGNSVLELISAPTKITGVHYVQGVIIFHDVFDN
EHGGAQIRVEGVYVWPFRQLRMVAYSGKGGELGQEDDYLLSNPYHLLGLFSSQVFQESPR
DKIWKRKHSPIYEMEKHCNVEIAAQVSRVSSSTTDVDHDHYHLEGLMESPSVDDDGDCFS
PMLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEYSNTQSGASKVSILMIGQQ
GIIDSYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPMSSGEGW
EAMRRELSILYSRFYGILLGGILVMYEFHKFLRPLLLLLHSFWIPQVVTNVIRDLRKPLH
PHYILGMTITRLAIPLYVFGCPHNFMRIEPDKNWCICLGIFMAFQASILLLQHYLGSRWF
IPRQILPEKYSYYRRFNQDAVRVSDCVICMTAIDLTQRANHWMVTPCDHFFHSGCLQRWM
DIKMECPTCRRPLPPA

Transcript Sequence

Gene sequence data has not been registered.